|Directed by:||Yap Ee Jean, Dzubir Mohammed Zakaria|
|Released:||May 27, 2012: TV3|
August 21, 2012: Disney Channel Asia
|Number of Episodes:||13|
Ang Season 2 ng BoBoiBoy ay unang ipinalabas noong ika-11 ng Marso sa TV3, at ika-18 ng Hunyo sa Disney Channel Asia.
Walang opisyal na pamagat ang lahat ng episodes ng seasong ito.
- Fang - (voiced by Wong Wai Kay): Known as the "Mystery Boy" (Budak Misteri) in the Extended Finale. As a new character in the series he is jealous of BoBoiBoy (so are Adu Du and Probe) because all of his classmates likes BoBoiBoy more than him. From Episode 4 onwards, Adu Du, and Probe became friends with him.
- Teacher Timmy - (voiced by Fatimah Zafira): As an English Teacher and 5th Grade Section Jujur (Honest) adviser of Rintis Island Primary School.
- Ejo Jo - (voiced by Noriman Saffian): An alien who's the General Commander of the Planet Ata Ta Tiga.
- Iwan - (voiced by Nurasyikin "Ekeen" Khalit): He joined Team BoBoiBoy in the Soccer game against Team Adu Du if it wasn't for him Team BoBoiBoy would have been defeated. And his one of BoBoiBoy's classmates.
- Season 2, Episode 1
- Season 2, Episode 2
- Season 2, Episode 3
- Season 2, Episode 4
- Season 2, Episode 5
- Season 2, Episode 6
- Season 2, Episode 7
- Season 2, Episode 8
- Season 2, Episode 9
- Season 2, Episode 10
- Season 2, Episode 11
- Season 2, Episode 12
- Season 2, Episode 13
- Pinalitan si Nizam Razak bilang mga direktor ng palabas sina Yap Ee Jean atDzubir Mohammed Zakaria.
- Sa Season 1, si BoBoiBoy ay nakasuot ng dalawang Power Bands. Sa Season 2, isa lamang ang kanyang isinuot..